PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00083g01229.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 1549aa    MW: 168519 Da    PI: 6.1901
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00083g01229.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.9e-0615261549226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                                ++++C+ f+++G Ck G++C + H+
  Peaxi162Scf00083g01229.1 1526 GQRICK-FYESGRCKKGASCDYLHP 1549
                                5799**.8899*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.88E-878132IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.8E-878140IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.56485151IPR019787Zinc finger, PHD-finger
SMARTSM002493.1E-787133IPR001965Zinc finger, PHD-type
CDDcd155687.71E-2087132No hitNo description
PROSITE patternPS01359088148IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001514.3E-4337419IPR019835SWIB domain
SuperFamilySSF475922.4E-20337415IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.109.7E-26338422IPR003121SWIB/MDM2 domain
PfamPF022012.2E-14341414IPR003121SWIB/MDM2 domain
SMARTSM007191.1E-32475588IPR004343Plus-3 domain
PROSITE profilePS5136014.356475613IPR004343Plus-3 domain
SuperFamilySSF1590421.57E-21476582IPR004343Plus-3 domain
PfamPF031265.9E-18481574IPR004343Plus-3 domain
SuperFamilySSF552772.75E-14718773IPR003169GYF domain
CDDcd000722.13E-15721777No hitNo description
PROSITE profilePS5082914.653721774IPR003169GYF domain
SMARTSM004443.2E-10722776IPR003169GYF domain
Gene3DG3DSA:3.30.1490.405.3E-15723774IPR003169GYF domain
PfamPF022131.5E-9724765IPR003169GYF domain
PROSITE profilePS5010315.315241549IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.65E-615241548IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-415281548IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1549 aa     Download sequence    Send to blast
MEGTSSSSGM YNPSIQTSSV QHLNDFQLPG GPVQVAGVAP TTAAAGGVGN SVVIGEKRKR  60
GRPPRNQGAG PVKPPPMKKQ REEEEDVCFI CFDGGSLVLC DRKGCPKAYH PACIKRDEAF  120
FRSKAKWNCG WHICSVCQKA SHYLCYTCTY SLCKACTKNA DYLCVRGNKG FCSTCMRTIM  180
LIENKDQANK EMVDFDDKGS WEYLFKVYWV ILKEKLSLTL DELVQAKNPW KETDAVHGKR  240
QLMHYGHYVA NDGKGIAGQS IDHLEMKKPM ELLEQSRNDP PNTESRTIAE SNNVSTLSST  300
PQSQLTKPVE KLEFQNEDCL RTKQGSVAMH TSVNGCMTWA SKELLDFVAH MKGGDTSAIS  360
QFDVQALLLD YIKRNNLRDP RQKSQIICDM RLKSLFGKPR VGHIEMLKLL EFHFMIKEES  420
EKSAFIPAGI VGTVTGHVKP DNSDISSLMN KTKKRKTRKN GEVKIAHVNL DEYAAIDAHN  480
MNFLYLRRDL MENLAEDVEK FHDKVVGSVV RIRIPGNDQK QEIYRLVHVV GTCKSSEPYK  540
IRDKTVDVLL EVLNLDKKEA VSIDSISNQD FCENIDIEYE DFLDNPTLRE CVEKLELLKT  600
PEERQRRLLE IPEVHADPKM DPNYESESND KRKVEYPAPR CTRISRRGEK PVSSGSLVKE  660
EGSIMARVRM SEKGEACGTN ILDKLGNRLT ADQAVDRSGS EASLASVTTA NSSSGNNCET  720
DKLWHYRDPT GKIQGPFSVI QLRKWNTSGL FPLDMRIWTN HEHDDSILLT NALKGIFHKA  780
PQLHGKTSSQ SLEAAASDRK SIRWSENANG TEGQNGKKEA PGHLHNANNH SNGNTELTRM  840
NGLSPSFPQS LDSLKGNNPC SGKPQISISV PPSSQREVVL ALPHQERGHE NDNYHFVADH  900
VTSKSRGNTM SQIDDGCGHN TQSKSRQAAG QNKGSFTSNR CSNNLDSGSS FASANSYEQK  960
AKVNIPDLPS PTPETSYGEL EAEAAEKLLL LSSVIPSDIH DLPSPTPNSN REAQGEDAAE  1020
TKESVPSVLP VQESGHRWSS ASNLVIGGSQ FCEVADECGR NSPAAKPATE ELDAGHASVS  1080
SLQPAEAVGD HVATPTSNAD QLTSKPSAEE LDSGLVSASS LKLAEAVDDH VPTPTSNADQ  1140
LTSKPSAEEL DSGLVSASSL KPAEAVDDHV PIPTSNGDQL IVKPSTQEWD SGLVSISSLK  1200
PAEAVGDDVA TPASNADQLN HTSLSLPVSN FFSEPIEFST LAEESVSDLL AEVDAMESLN  1260
QNGMGSPTSA MRCGDEMISG CKDDCFSPIE ELSPTHDPVR SDALSSTGDL HLPCQSTVID  1320
ETVRASRVDA FDPLKRSSGN SSTSSEGETK SADVLFSQRV SGSNIPAPCT TRETTAYPAM  1380
EVSCSTAPAA DVFFSQRVSG SNIPAPCTTR ETTAYPAMGR STGYEGMNSG RAAAPGNMTW  1440
GGTVQGYANV GHGGSIGGAW GNSHMNRGAP FTGNPVWDSQ RRYAGERAGG PRALQGGDTG  1500
FDRGRSSWNR QQPYGGGGYS RPPPRGQRIC KFYESGRCKK GASCDYLHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A2e-13811541181Histone-lysine N-methyltransferase NSD3
4gnd_C2e-13811541181Histone-lysine N-methyltransferase NSD3
4gne_A2e-13811541181Histone-lysine N-methyltransferase NSD3
4gnf_A2e-13811541181Histone-lysine N-methyltransferase NSD3
4gng_A2e-13811541181Histone-lysine N-methyltransferase NSD3
4gng_D2e-13811541181Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474357.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X3
TrEMBLK4BAW70.0K4BAW7_SOLLC; Uncharacterized protein
STRINGSolyc02g084520.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21811516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding